I would like to know if it's possible to monitor end to end transaction through Websphere and message broker in the middle as I see them now as isolated jvms is appdynamics support IBM message brokers messages monitoring
I am glad to see your questions. However it is not clear your goal. I assume your APM context might be to monitor from frontend[ Eg Mobile banking or may be Internetbanking] to Middleware[ IBM Broker] then Core Banking[t24 CBS, might have T24 TWS].
If it is the case then you can use HTTP Agent followed by J2EE Agent[may be IBM WAS] then automatically it tracks upto ESB web service inluding DB yes your IIB/broker execution Group/Services will have one unit of transactions will be tracked . Regarding Backend end CBS try to explore TWS if you have. I request to start from front end to middleware then backend. Hope you are not doing from other way around. I like to learn your problem statement to visualise better.